autoseq autoseq is a small package of base calling software for ABI automated DNA sequencers. It is intended as a starting point for researchers interested in new base calling algorithms. It implements a simple Bayesian peak identification algorithm which is experimental and does not generally perform better than software provided by ABI. autoseq is written in C++. The package includes C++ classes which represent ABI trace files, individual traces, and lists of picked peaks.

Current Version:   1.1 License Type:   Public Domain

Home Site: http://dasher.wustl.edu/~reece/autoseq/ Source Code Availability:   Yes (from Home Site) Available Binary Packages: Debian Package:   No RedHat RPM Package:   No Other Packages:   No Targeted Platforms: Linux, Unix; others untested Software/Hardware Requirements: C++ compiler (known to compile with g++ 2.7.2.1)

Other Links: None Mailing Lists/USENET News Groups: None User Comments: This code is no longer being developed. However, the author (Reece) will be happy to incorporate code and documentation submissions. See A Screen Shot? (Not Yet)

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